Cell culture and transfection
SKMES1 cells were cultured in MEM medium containing 10% fetal bovine serum (FBS). RPMI-1640 medium containing 10% FBS was used to culture NCI-H226 and THP-1 cells. All cell mediums were kept in an incubator with 5% CO2 at 37℃. SKMES1, NCI-H226, and THP-1 cells were purchased from iCell Bioscience (Shanghai, China). Lipofectamine 3000 was adopted to transfect SH3RF2/LZTS2 overexpression plasmids or SH3RF2-shRNA into the cells. Stably transfected cells were selected using G418. For clone formation, cells were seeded in the culture dish at 300 cells/dish. Visible clones can be formed in about 2 weeks. Colonies were fixed with 4% paraformaldehyde at room temperature for 25 min and stained with crystal violet dye for 5 min. The CCL2 levels were determined using the Human CCL2 ELISA Kit (Lianke Bio, China).
CCK-8
The cells were seeded into a 96-well culture plate at a cell number of 5×103 per well and cultured in a 37°C, 5% CO2 incubator for 0 h, 24 h, 48 h, and 72 h respectively. Then the cells in each well were incubated with 10 µl CCK-8 for 2 h. The optical density at 450 nm was measured with a microplate reader.
In vivo tumor formation
Four-week-old male BALB/C nude mice were maintained under a 12-h light/dark cycle at 22 ± 1℃ with humidity 45–55% and allowed free access to water and food. The mice were subcutaneously injected with lung cancer cells (1×107 cells per mouse) with stable transfection. Tumor volume was measured every 3 days, and 33 days after inoculation, tumor tissue was collected, weighed and photographed. For radiation therapy, When the tumor volume in the control group reached approximately 150 mm3, the nude mice in the radiotherapy group were treated with 15 Gy radiotherapy (X-ray). All animal experiments were approved by the Laboratory Animal Ethics Committee of the Fourth Hospital of Hebei Medical University (No. IACUC-4th Hos Hebmu).
Immunofluorescence
Cells were fixed with 4% paraformaldehyde for 15 min and incubated with 0.1% TritonX-100 for 30 min. After treatment with 1% BSA for 15 min, cells were incubated with primary antibody overnight at 4℃ and secondary antibody for 60 min at room temperature. The nuclei were counterstained with DAPI. Finally, the cell sections were sealed with anti-fluorescence quencher and observed under a fluorescence microscope.
Transwell
THP-1 cells were incubated with 150 nM PMA for 24 h and induced to differentiate into M0 macrophages. M0 THP-1 cells were collected by centrifugation and then mixed with serum-free medium to make a single-cell suspension. M0 THP-1 cells (200 µl) were seeded in the upper chamber, and conditioned media (800 µl) from different groups were placed in the lower chamber. After 24 h of culture, the cells were fixed with 4% paraformaldehyde at room temperature for 20 min, and stained with crystal violet for 1 min. Cells were observed under an inverted microscope (IX53, Olympus, Japan).
Immunohistochemistry
Tumor tissue was dehydrated using graded alcohol, cleared in xylene, and embedded in paraffin. Tissue sections were de-paraffinized with xylene and rehydrated. Low heat-induced antigen retrieval was conducted for 10 min. The sections were incubated with 3% H2O2 for 15 min at room temperature and blocked with 1% BSA for 15 min. Primary antibody incubation was performed at 4℃ overnight and secondary antibody was conducted at 37℃ for 60 min. DAB was used to color development and hematoxylin was employed as counterstain. After dehydration, transparency and sealing, the staining was observed under a microscope.
Flow Cytometry
M0 THP-1 cells were cultured using conditioned media for 24 h, incubated with CD206 antibody at 4℃ for 30 min and subjected to flow cytometry. For cell cycle detection, cells were incubated with 10 µM BrdU for 30 min at 37℃. After washed with PBS, cells were mixed with pre-cooled 100% ethanol and kept at 4℃ overnight. Cells were collected by centrifugation, followed by incubation with HCl and Triton X-100 for 10 min. Followed by centrifugation, cells were mixed with water and boiled for 10 min. The cooled cells were mixed with 1 ml of 0.5% Triton X-100 and centrifuged. The pellets were resuspended in 50 µl PBS containing 1% BSA and 0.5% Tween and 1 µl of primary FITC-labeled anti-BrdU antibody and kept at 4℃ for 1 h in the dark. After wash with PBS, the cells were incubated with 100 µl RNase A for 30 min at 37℃ and PI for 30 min at 4℃ in the dark.
Tumor tissue is cut into pieces and digested with type IV collagenase at 37°C for 1 h. Cells were collected and resuspended with 90 µl buffer. Resuspended cells were incubated with CD11b antibody-coated magnetic beads at 4℃ for 15 min. CD11b + cells were resuspended with PBS and incubated with F4/80 and CD206 antibody for 30 min at 4℃ in the dark, and detected by a flow cytometer.
Immunoprecipitation (IP)
Non-denaturing lysis buffer (Solarbio, Beijing, China) was used to extract total protein, and the concentration of protein was determined by BCA kit. Antibodies were immobilized on AminoLink Coupling Resin (Pierce, USA). The supernatants were incubated with antibody-immobilized resin overnight. Then the resin was washed with elution buffer. The eluted samples were analyzed by immunoblotting. SH3RF2 antibody (sc-100976, Santa Cruz, China), LZTS2 antibody (15677-1-AP, Proteintech, China), MYC antibody (AE070, ABclonal, China), and Flag antibody (AE063, ABclonal, China) was used in this part.
Western blot
The polyacrylamide gel consisted of 5% stacking gel and 8% resolving gel. The protein samples were mixed with loading buffer and then heated in a boiling water bath for 5 min. A volume of 20 µl loading samples was subjected to SDS-PAGE. The separated proteins were transferred to a PVDF membrane. Following sealing with blocking solution, the membrane was incubated with primary antibodies overnight at 4℃ and secondary antibodies for 1 h at 37℃. Finally, ECL luminescence solution was used to develop the blot. β-catenin antibody (51067-2-AP, Proteintech, China), rabbit anti–goat IgG-HRP (SE238, Solarbio, China), goat anti-rabbit IgG-HRP (SE134, Solarbio, China), goat anti-mouse IgG-HRP (SE131, Solarbio, China), Histone H3 antibody (GTX122148, Gene Tex, USA) and GAPDH antibody (60004-1-Ig, Proteintech, China) were used here. Other antibodies are listed previously.
Real time PCR
Total RNA was extracted by chloroform extraction and isopropanol precipitation. NanoDrop One was used to determine the concentration of RNA. RNA is reverse transcribed into cDNA using All-in-One First-Strand SuperMix (Magen Biotechnology, Guangzhou, China). SYBR GREEN were used for real time PCR reaction. The 2 −△△CT method was used to analyze expression data. The forward primers were as follows, SH3RF2: 5’-CGTGGTGGTGGAGATGG-3’, CCL2: 5’-TCATAGCAGCCACCTTCATT-3’, CD163: 5’-GAGACTGTTAGGGAAGGTG-3’, Arg-1: 5’-TTTGCTGACATCCCTAAT-3’, IL-10: 5’-TGAGAACCAAGACCCAGAC-3’. The reverse primers were as follows, SH3RF2: 5’-TGGGAGGTGTAATGTTTGGTG-3’, CCL2: 5’-TCACAGCTTCTTTGGGACAC-3’, CD163: 5’-TGTTTGTTGCCTGGATT-3’, Arg-1: 5’-TTCCGTTCTTCTTGACTT-3’, IL-10: 5’-CATTCTTCACCTGCTCCAC-3’.
TOPflash/FOPflash reporter assay
TOPflash/FOPflash vector was purchased from YouBio (Shanghai, China). To verify the effect of SH3RF2 on the activation of β-catenin signal pathway, TOP flash (or FOPflash) vector and pRL-TK vector were co-transfected into SH3RF2 stably overexpressed or knocked down LUSC cells using Lipofectamine 3000. A microplate reader was used to detect luciferase activity. The activity of firefly luciferase was normalized to that of renilla luciferase.
Statistical analysis
All data are presented as mean with SD and analyzed by GraphPad Prism. Data with normal distribution and homogeneity of variance were analyzed by unpaired t test or one- or two-way ANOVA. Tukey’s post hoc test was applied to test multiple comparisons. P < 0.05 was regarded as significant.